Labels and cropped volume

[Fabien]

Hi all,

I scanned 4 specimens together and I did the segmentation on the entire volume as it was easier but I would like to get the volume fraction of the labels for each specimen.

In the ideal case I would just duplicate the labels and crop the volume of interest to calculate the volume fraction. The problem is, when I crop the volume, the corresponding labes are not cropped which renders the analysis impossible.

As a result I have to duplicate the volume, crop separately the 4 specimens and only then do the labelling on the 4 specimens. Is there any ways of avoiding this (i.e. how to update the labels as a function of the volume they are attached to)?

Thanks for your help.

[forum_admin]

Hi Fabien,

When you crop the duplicated volume, can you record the crop box dimensions, and apply that to your (also duplicated) label volume?

Let me know how it goes.

-Shawn